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Transcriptomic profiling after B-cell depletion reveals central and peripheral immune cell changes in multiple sclerosis.

Abstract

Multiple sclerosis (MS) is a complex genetically mediated autoimmune disease of the central nervous system where anti-CD20-mediated B cell depletion is remarkably effective in the treatment of early disease. While previous studies investigated the effect of B cell depletion on select immune cell subsets using flow cytometry-based methods, the therapeutic impact on patient immune landscape is unknown. In this study, we explored how B cell depleting therapies modulate the immune landscape using single-cell RNA sequencing (scRNAseq). We demonstrate that B cell depletion leads to cell type-specific changes in the abundance and function of CSF macrophages and peripheral blood monocytes. Specifically, a CSF-specific macrophage population with an anti-inflammatory transcriptomic signature and peripheral CD16+ monocytes increased in frequency post-B cell depletion. This was accompanied by increases in TNFalpha messenger RNA and protein in monocytes post-B cell depletion, consistent with the finding that anti-TNFalpha treatment exacerbates autoimmune activity in MS. In parallel, B cell depletion induced changes in peripheral CD4+ T cell populations, including increases in the frequency of TIGIT+ regulatory T cells and marked decreases in the frequency of myelin peptide loaded-tetramer binding CD4+ T cells. Collectively, this study provides an exhaustive transcriptomic map of immunological changes, revealing different cell-type specific reprogramming as a result of B cell depletion treatment in MS.

Authors: Wei J, Moon J, Yasumizu Y, Zhang L, Raddassi K, Buitrago-Pocasangre NC, Deerhake ME, Strauli N, Chen CW, Herman A, Pedotti R, Raposo C, Yim I, Pappalardo JL, Longbrake EE, Sumida TS, Axisa PP, Hafler DA,
Journal: J Clin Invest;2025 Mar 11:e182790 doi:10.1172/JCI182790
Year: 2025
PubMed: PMID: 40067358 (Go to PubMed)